Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015928136.1_cds_XP_016475785.1_67681
CDS Infomation

[gene=LOC107797411] [db_xref=GeneID:107797411] [protein=delta-1-pyrroline-5-carboxylate synthase-like isoform X1] [protein_id=XP_016475785.1] [location=join(10045..10104,11324..11395,11487..11590,12730..12832,12967..13128,13594..13883,14913..15063,15150..15314,15411..15488,16237..16326,16637..16723,16844..16930,17007..17103,17215..17318,17410..17485,23940..24090,24221..24289,24517..24583,24671..24741,25261..25342)] [gbkey=CDS]
Sequence

ATGGATTCGGCTGATCCTGCTCGGGCATTTGTTAAGGACGTCAAACGAATTATTATCAAG
GTTGGAACTGCAGTCGTGACTCGAGGTGATGGAAGATTAGCACTTGGAAGAATGGGCTCA
CTGTGTGAGCAGATACGGGAACTTACCACCCAAGGCTTTGAAGTTATTTTGGTGACCTCA
GGTGCTGTTGGTGTTGGCCGTCAGCGGCTTCGATATAGGAAGCTCATTAATAGCAGCTTT
GCGGACCTTCAAAAGCCTCAAGGTGATCTTGATGGCAAGGCTTGTGCTGCTGTGGGTCAG
AATGGCCTGATGGCTCTGTATGATACGTTATTCAGTCAGTTGGACGTAACCTCAGCTCAG
CTTATGGTGACTGATAATGACTTTAGAGATCCGGACTTTAGGAGACAACTCAATGAAACT
GTAAACTCATTGCTCTGTCTGAAAGTTGTACCTATATTTAACGAGAATGATGCTATCAGC
ACGCGGAAAGCTCCTTATGAGCTCTCTTTGCAGGACTCCTCTGGAATCTTTTGGGATAAT
GACAGTTTGGCAGCTCTACTGGCTCTGGAGCTAAAAGCTGATCTTCTTGTTTTGTTGAGC
GACGTAGACGGTCTTTACACTGGCCCTCCAAGTGATCCGCAATCAGAGCTAATTCATACT
TATGTTAAAGAGAAGCACGAGGGGTTGATTACTTTTGGAGACAAGTCTAGAGTGGGAAGA
GGGGGCATGACTGCCAAGGTAAAAGCTGCTGTGTATGCAGCTTATGCTGGCATTCCTGTT
GTGATAACCAGTGGCTTCGCCAACAACAATATTATTAAAGCACTAGACGGAGAACGTGTT
GGCACTCTGTTTCATCGTGAAGCCATTAAATGGGCGTCAACAGGGGATATCGATGCTCGC
GAGATGGCAGTTTCTGCTAGAGAATGTGCCAGGCGGCTTCAGGCACTCTCTTCTCAAGAA
AGGAGTAAAATTTTGCTAGATGTAGCTGATGCACTGGAAGCAAATGAAGAGGAAATCCTG
GCTGAAAATGAAGCTGATGTGGCTGCTGCTCAACAAGCTGGATACGAGAAGGCTTTGATA
TCTCGGTTGGCTTTGAAGCCAGGAAAAATTTCAAGTCTTGCAAACTCTGTCCGTGTGCTT
GCTAACATGGATGAGCCTATTGGCCGCATTTTAAAGAGGACGGAGCTTGCTGATGGAATC
ATATTGGAGAAGACGTCATCTCCATTGGGCGTTCTCCTGATTATTTTTGAGTCACGACCT
GATGCACTTGTACAGATAGCTTCTCTAGCAGTCCGAAGTGGGAATGGCCTCTTGTTGAAA
GGAGGAAAGGAGGCCAAAAGATCAAATGCAATTTTACACAAGGTGATTACCTCAGCCGTT
CCTCCAAGCGTTGGTGAAAAACTTATTGGGTTAGTTACTTCTAGAGAAGAGATCCCTGAG
TTGCTTAAGCTTGATGATGTGATTGATCTTGTTATACCAAGAGGTAGCAATAAACTTGTT
TCTCAAATTAAGGCCGCAACAAAAATTCCTGTTCTTGGTCATGCTGATGGTATTTGCCAT
ATTTTCATTGACAAGTCTGCTGACTTGGATATGGCCAAACGTATTGTTTCGGATGCGAAA
ACAGATTATCCAGCAGCCTGCAATGCAATGGAAACTCTTCTCGTTCATAAGGATTTGGTG
CAAACCGGAGGTCTTAATGACCTGATTCTGGAACTTCAAGAAAAAGGTGTTTCTTTATTT
GGTGGACCTAAAGCAAGCTCCCTACTTAGTATTCCCGAAGCAAATTCCTTCCATCATGAA
TATGGTGCACTGGCTTGCACTGTCGAAGTTGTTGAAGATGTGAATGCTGCAATAGATCAT
ATACATCGTCACGGAAGTGCTCACACTGATAGCATCATTACTGAAGACAAAGAAGTTGCT
GAACTCTTTTTACGTCAAGTTGACAGTGCTGCTGTACTTCATAATGCAAGCACAAGATTT
AGTGACGGCTTTCGTTTTGGACTTGGTGCTGAGGTGGGGATTAGTACAAGTCGCATTCAT
GCTCGTGGTCCAGTTGGAGTAGAGGGATTGCTGACAACTAGATGGCTTGCAAGGGGATCT
GGACAAGTCGTCGATGGTGATAAAGCAATTGTCTACACTCACAAAGACCTTAATCTGGAG
GCTTGA

Peptide Sequence

PEP ID

XP_016475785.1
PEP Infomation

PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like isoform X1 [Nicotiana tabacum]
Sequence

MDSADPARAFVKDVKRIIIKVGTAVVTRGDGRLALGRMGSLCEQIRELTTQGFEVILVTS
GAVGVGRQRLRYRKLINSSFADLQKPQGDLDGKACAAVGQNGLMALYDTLFSQLDVTSAQ
LMVTDNDFRDPDFRRQLNETVNSLLCLKVVPIFNENDAISTRKAPYELSLQDSSGIFWDN
DSLAALLALELKADLLVLLSDVDGLYTGPPSDPQSELIHTYVKEKHEGLITFGDKSRVGR
GGMTAKVKAAVYAAYAGIPVVITSGFANNNIIKALDGERVGTLFHREAIKWASTGDIDAR
EMAVSARECARRLQALSSQERSKILLDVADALEANEEEILAENEADVAAAQQAGYEKALI
SRLALKPGKISSLANSVRVLANMDEPIGRILKRTELADGIILEKTSSPLGVLLIIFESRP
DALVQIASLAVRSGNGLLLKGGKEAKRSNAILHKVITSAVPPSVGEKLIGLVTSREEIPE
LLKLDDVIDLVIPRGSNKLVSQIKAATKIPVLGHADGICHIFIDKSADLDMAKRIVSDAK
TDYPAACNAMETLLVHKDLVQTGGLNDLILELQEKGVSLFGGPKASSLLSIPEANSFHHE
YGALACTVEVVEDVNAAIDHIHRHGSAHTDSIITEDKEVAELFLRQVDSAAVLHNASTRF
SDGFRFGLGAEVGISTSRIHARGPVGVEGLLTTRWLARGSGQVVDGDKAIVYTHKDLNLE
A

Transcript Sequence

Gene sequence data has not been registered.